Software publications by Don Gilbert
2002. BioGridRunner,
a preliminary bioinformatics client application for data grid computing.
http://iubio.bio.indiana.edu/ grid/runner
1995 - 1998. SeqPup, biosequence editor & analysis software for for molecular
biology, available for common operating systems. Freely available, open source in C++ and Java.
http://iubio.bio.indiana.edu/ soft/molbio/seqpup/
1997 - 1999. Phylodendron, software for phylogenetic tree drawing in Java.
http://iubio.bio.indiana.edu/ soft/molbio/java/apps/trees/ and
http://iubio.bio.indiana.edu/treeapp/
1996. loopDloop in Java, for drawing RNA secondary structure.
http://iubio.bio.indiana.edu/ soft/molbio/java/apps/loops/
1996. Bopper, a new Internet biocomputing office protocol for client-server
data analysis. This employs CORBA client-server protocols and works with the SeqPup
sequence analsysis package.
ftp://iubio.bio.indiana.edu/ util/dclap/source/bopper.tar.gz
1996. Portable FlyBase server available for Drosophila data.
http://flybase.bio.indiana.edu/ docs/Portable-server/
1996. Fruit flies in your Java: a Java mapplet for Drosophila genome map
browsing. Bionet.Software, Feb 1996. . See also
http://flybase.bio.indiana.edu/ maps/java/
1995. SRS-FastA: Similarity searches of Genbank subsets.
http://iubio.bio.indiana.edu/srsfasta/
1995. Genbank searches at IUBio archive
http://iubio.bio.indiana.edu/ Genbank-Sequences/
1995. New Sequence Retrieval Service (SRS) node at IUBio, Indiana
http://iubio.bio.indiana.edu/srs/srsc
1994. DCLAP, a C++ class application library package for bioscience applications (cross-platform)
ftp://iubio.bio.indiana.edu/ util/dclap/
1992. Booleans, partial words and other WAIS modifications in biology data searches.
ftp://iubio.bio.indiana.edu/ util/wais/
1992 IUBio Archive through Internet Gopher. Feb. 1992.
.
gopher://iubio.bio.indiana.edu/
1992. SeqApp, a biological sequence editor and analysis program for Macintosh computers.
ftp://iubio.bio.indiana.edu/ molbio/seqapp/
1992. GopherApp, an Internet Gopher client for Macintosh computers.
ftp://iubio.bio.indiana.edu/ util/gopher/gopherapp/
1992. loopDloop, a Macintosh application for drawing and editing RNA secondary
structure displays. August 1992.
ftp://iubio.bio.indiana.edu/ molbio/loopdloop/
1990. GenBank Search, a Hypercard stack for network searching and fetching sequences from the
GenBank e-mail server. October 1990.
ftp://iubio.bio.indiana.edu/ molbio/mac/gbsearch-ncbi.hqx
1990. MulFold, a Macintosh application, port of Michael Zuker's MFOLD for estimating RNA
secondary structure. October 1990.
ftp://iubio.bio.indiana.edu/ molbio/mac/mulfold.hqx
1990. TreeDraw Deck, a Hypercard implementation of Joseph Felsenstein's phylogenetic tree drawing
routines. June 1990.
ftp://iubio.bio.indiana.edu /molbio/mac/treedraw-old.hqx
1989. ReadSeq, C and Pascal routines for converting among nucleic acid & protein sequence file formats,
suitable for various computers.
ftp://iubio.bio.indiana.edu /molbio/readseq/
1989. GelFragSizer, a Macintosh Hypercard stack for calculating and plotting restriction fragment
sizes for molecular biology.
ftp://iubio.bio.indiana.edu/ molbio/mac/gelfragsizer.hqx
1989. Enzyme Kinetix, a Macintosh Hypercard stack for calculating and plotting enzyme kinetics for
biochemistry.
ftp://iubio.bio.indiana.edu/ molbio/mac/enzymekinetics.hqx
1989. Dotty Plotter, a Macintosh application for dot plot sequence comparisons.
ftp://iubio.bio.indiana.edu/ molbio/mac/dottyplot.hqx
1989. HyperGCG, an unfinished Hypercard front-end for using molecular biology software, especially
GCG, on VMS Vaxes.
ftp://iubio.bio.indiana.edu/ molbio/mac/hypergcg.hqx
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